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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGGGAGGAAAGACTCGAGATGAAGTTCCAACAGCAATGTTCCTGCGCAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttgttgtgaaatgaaatttatttataaataatattagaacaccatagctcattaaatttcatttctattgtaacctttggtttacatgttcacag

Basic information

species Zea mays
transcript GRMZM5G844096_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844096_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g29690.1 (Oryza sativa), 5'ss of exon 4
CTTTTGGGAGGAAAGACTCGAGATGAAGTTCCAACAGCAATGTTCCTGCGCAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttgttgtgaaatgaaatttatttata--aataatattagaacaccatagctcattaaatttcatttctattgtaacctttggtttacatgt-tcacag
||| | ||||| || ||  ||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||||| ||||| ||| |||||||||||| |   | ||    ||  ||| || ||| ||    ||||  ||   ||  | | |  ||| | |    || ||||| | | ||||    | |   | || |||
CTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGgtaatgcattttactgaactaaagttgtttttagtggtaatgctaattcaa-acaccatattta-tcatgttcctatttttatctttcccgtcctcttatcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61118534|gb|DN559495.1|DN559495
EST:     CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG                         GTGTACCGCGGATCTTCACAGAGAGTGACCAGCAAGAAATCTCTGCACTGA
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
EST: gi|71763677|gb|DR961614.1|DR961614
EST:     CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG                         GTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
EST: gi|71426132|gb|DR807182.1|DR807182
EST:     CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG                         GTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA