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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatggcccagcttcttacctttatcgtgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGTTCCAACAGCAATGTTCCTGCGCAGCGGTGATATAGTTTTGATGGCTGGG

Basic information

species Zea mays
transcript GRMZM5G844096_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844096_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g29690.1 (Oryza sativa), 3'ss of exon 3
gtatgatggcccagcttc-ttacctttatcgtgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGTTCCAACAGCAATGTTCCTGCGCAGCGGTGATATAGTTTTGATGGCTGGG
   | ||      |||||  || |||| || || |  | |  ||     | | || |    |  |  ||    |||||   ||||||||||| ||||| ||||| |||||| | ||||| || ||  ||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||
--gtaataattatgcttcactaactttttcatg-ttatgatgtcactcgatcttaacaaagtggc--ttcctttttataaatttagTTTGGGGTGCAAGTGCATTTTTCTTCTTGGAGGCAAAACGAGAGATGAAGTTCCAACAGCAATGTTTCTGCGAAGTGGTGATATCGTATTGATGGCTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71763677|gb|DR961614.1|DR961614
EST:     CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAG                         TTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
genomic: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggc ... attcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
EST: gi|71426132|gb|DR807182.1|DR807182
EST:     CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAG                         TTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
genomic: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggc ... attcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGTTCCAACAGCAATGTTCCTGCGCAGCGGTGATATAGTTTTGATGGCTGGG
                                       tcatttattctttt  CT-rich tract
                                       tcatttattctttta  TA-rich tract