1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catacttgatgcatattcgctttatttgttatcttgtatggtgtactgttcttttgtattaaatatgtggatggatgtatgtatgtttgcgctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCAGCAGTCGTTTGGTGGAG
species | Zea mays |
transcript | GRMZM5G844096_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG AGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCEST: gi|71426132|gb|DR807182.1|DR807182
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
EST: TTGGTCTGCAATTTGATTGGTCAAAG AGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCEST: gi|71449424|gb|DR830474.1|DR830474
genomic: TTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
EST: GAGGAAGCTCCGGTGGAGCACCCTTGGTCTGTCA-TTTGATTGGTCAAAG AGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCEST: gi|78117848|gb|DV536235.1|DV536235
genomic: GAGGAAGCTCCGGTGGAGCACCCTTGGTCTG-CAATTTGATTGGTCAAAGgtatgtatcc ... gctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG AGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCEST: gi|71426133|gb|DR807183.1|DR807183
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG AGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGC
ctgttcttttgtattaaatatgtggatggatgtatgtatgtttgcgctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCAGCAGTCGTTTGGTGGAG
ttttgtattaaatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catacttgatgcatattcgctttatttgttatcttgtatggtgtactgttcttttgtattaaatatgtggatggatgtatgtatgtttgcgctcgcatagAGAACGATCCGGTCGAAGAGCCCGAGGAATTCGCAGGAGAAGCCCCTGAGCAGCAGTCGTTTGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - atgcata
- - - - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc