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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcaagtcatttctcatttcccatatggccaagaaatcataatgccattacaccaaatatttttctgatatattagtactcttctctgtaactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGATCAGGGAAAGCTTGAAAACATTTCCACAGCCACCTAATAGGACTAATTT

Basic information

species Zea mays
transcript GRMZM5G844096_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78081414|gb|DV509826.1|DV509826
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|50334172|gb|CO529298.1|CO529298
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|71449424|gb|DR830474.1|DR830474
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|211248592|gb|FL451515.1|FL451515
EST:     GCCCCGTGTTCTGTTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: GCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|37423115|gb|CF649283.1|CF649283
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|78117848|gb|DV536235.1|DV536235
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|71326797|gb|DR800065.1|DR800065
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: gi|71426133|gb|DR807183.1|DR807183
EST:     TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG                         GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattacaccaaatatttttctgatatattagtactcttctctgtaactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGATCAGGGAAAGCTTGAAAACATTTCCACAGCCACCTAATAGGACTAATTT
                                         ctgtaac  putative branch site (score: 3)
          aaatatttttctgata  TA-rich tract