1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttttgttgtgaaatgaaatttatttataaataatattagaacaccatagctcattaaatttcatttctattgtaacctttggtttacatgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGATTTCACAACTATCTAGTGGAGATGACGTCTTTATCTTGGAGTATATCAA
species | Zea mays |
transcript | GRMZM5G844096_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG GTGTACCGCGGATCTTCACAGAGAGTGACCAGCAAGAAATCTCTGCACTGAEST: gi|71763677|gb|DR961614.1|DR961614
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
EST: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG GTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGAEST: gi|71330832|gb|DR802215.1|DR802215
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
EST: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATG GTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
genomic: CAGCGGTGATATAGTTTTGATGGCTGGGGAAGCACGAGAACGCTTCCATGgtattttttg ... atgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGA
accatagctcattaaatttcatttctattgtaacctttggtttacatgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGATTTCACAACTATCTAGTGGAGATGACGTCTTTATCTTGGAGTATATCAA
ttgtaac putative branch site (score: 52)
attaaatttcatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttgttgtgaaatgaaatttatttataaataatattagaacaccatagctcattaaatttcatttctattgtaacctttggtttacatgttcacagGTGTACCGCGGATTTTCACAGAGAGTGACCAGCAAGAAATCCCTGCACTGATTTCACAACTATCTAGTGGAGATGACGTCTTTATCTTGGAGTATATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG