1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGACATGCTTGGTGGCCATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggcccagcttcttacctttatcgtgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttag
species | Zea mays |
transcript | GRMZM5G844096_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAG TTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGTEST: gi|71330832|gb|DR802215.1|DR802215
genomic: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggc ... attcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
EST: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAG TTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
genomic: CATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggc ... attcttttagTTTGGGCTGCAAATGCATCTTTCTTTTGGGAGGAAAGACTCGAGATGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACATGCTTGGTGGCCATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggcccagcttcttacctttatcgtgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttag
- - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - GCAGAT