1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcaagtcatttctcatttcccatatggccaagaaatcataatgccattacaccaaatatttttctgatatattagtactcttctctgtaactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGATCAGGGAAAGCTTGAAAACATTTCCACAGCCACCTAATAGGACTAATTT
species | Zea mays |
transcript | GRMZM5G844096_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|71449424|gb|DR830474.1|DR830474
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|211248592|gb|FL451515.1|FL451515
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: GCCCCGTGTTCTGTTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|71330833|gb|DR802216.1|DR802216
genomic: GCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|71325243|gb|DR799312.1|DR799312
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|78121201|gb|DV539585.1|DV539585
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|37423115|gb|CF649283.1|CF649283
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGAEST: gi|71326797|gb|DR800065.1|DR800065
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
EST: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAG GGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
genomic: TGAGTGCCCCGGATTCGACCGCCCCGTGTTCTGCTTCTTGGACCGGCCAGgtaactgtga ... aactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGA
ccattacaccaaatatttttctgatatattagtactcttctctgtaactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGATCAGGGAAAGCTTGAAAACATTTCCACAGCCACCTAATAGGACTAATTT
ctgtaac putative branch site (score: 64)
aaatatttttctgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaagtcatttctcatttcccatatggccaagaaatcataatgccattacaccaaatatttttctgatatattagtactcttctctgtaactctgcagGGTTCTATTTCATTCCTGGTGCTTTATCAACTGAGGAACAATGCTGTTGGATCAGGGAAAGCTTGAAAACATTTCCACAGCCACCTAATAGGACTAATTT
ttgcaag
- - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - -tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - - -caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg