1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atataacctgcatttggaaaaataaactcctacaaaccattgctagaagtagcatattatgtcttcgtttttcttttgtaaaatccttatgctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTAGTCTTGCCAAAAAGATGGCTATTCCAGCTATGCCTTCTGGAGAAGAAT
species | Zea mays |
transcript | GRMZM5G844096_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG CGGAACTATGATGTATCACTTCCACAEST: gi|71330833|gb|DR802216.1|DR802216
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctttggcagCGGAACTACGATGTATCACTTCCACA
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG CGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTEST: gi|71330832|gb|DR802215.1|DR802215
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCT
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG CGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTEST: gi|71325243|gb|DR799312.1|DR799312
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCT
EST: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAG CGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTEST: gi|71326797|gb|DR800065.1|DR800065
genomic: TGAGGAAGCTCCGGTGGAGCACCCTTGGTCTGCAATTTGATTGGTCAAAGgtatgtatcc ... gctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCT
EST: AGGAAGCTCCCGGTGGAGCACCCTTGGTCTGCAAATTGATTGGGTCAA-G CGGAACTACCATGTATCACTTC
genomic: AGGAAGCTCC-GGTGGAGCACCCTTGGTCTGCAATTTGATTGG-TCAAAGgtatgtatcc ... gctttggcagCGGAACTACGATGTATCACTTC
gaagtagcatattatgtcttcgtttttcttttgtaaaatccttatgctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTAGTCTTGCCAAAAAGATGGCTATTCCAGCTATGCCTTCTGGAGAAGAAT
tttttcttttgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataacctgcatttggaaaaataaactcctacaaaccattgctagaagtagcatattatgtcttcgtttttcttttgtaaaatccttatgctttggcagCGGAACTACGATGTATCACTTCCACACAACAAGATTCCAGGTGCTCTAGCTAGTCTTGCCAAAAAGATGGCTATTCCAGCTATGCCTTCTGGAGAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -acctgca
- - - - - - - - -aaaaata
- - - - - - - - - - - - - - -ctacaaa
- - - - - - - - - - - - - - - - - - ccattgc
- - - - - - - - - - - - - - - - - - - - - - - -agtagca