1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatggaagggtgcaaaatgcaatttgtttacatggaactgctatcgttattctagattttgttaatgttgcttcccacatgtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGGTCAAATTGAGCAAAGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGG
species | Zea mays |
transcript | GRMZM5G841900_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|60336704|gb|DN203677.1|DN203677
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|211102907|gb|FK962288.1|FK962288
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCEST: gi|148991615|gb|EE033149.2|EE033149
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACC
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|78180011|gb|DV550384.1|DV550384
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTACGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|12046009|gb|BF728044.1|BF728044
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTACGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|211326704|gb|FL445906.1|FL445906
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|60341943|gb|DN208916.1|DN208916
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|28873659|gb|CB329617.1|CB329617
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|148965500|gb|EE016317.2|EE016317
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|18180077|gb|BM381287.1|BM381287
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|71439027|gb|DR820077.1|DR820077
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|71759867|gb|DR957804.1|DR957804
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGEST: gi|148935199|gb|EC879234.2|EC879234
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
EST: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTG GTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
genomic: TTCCACTGCGAAAAATGAACTTGGAGTCGTTTCAGCACAAAGCATAGCTGgtatggaagg ... gtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCG
aactgctatcgttattctagattttgttaatgttgcttcccacatgtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGGTCAAATTGAGCAAAGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGG
tgttaat putative branch site (score: 3)
tgtttcctc putative PPT
ttattctagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaagggtgcaaaatgcaatttgtttacatggaactgctatcgttattctagattttgttaatgttgcttcccacatgtttcctcagGTGGTACATTGGTTCCAATCAGTTGGACTGAGATGCAATGTGATTTGACCGGTCAAATTGAGCAAAGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA