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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcatctttgctgcaggaagtcgtcgaacatagtcacaatgtttttttaaaaagcagaagtttctaaaccgctgattcctgaaagctgtcacttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAG

Basic information

species Zea mays
transcript GRMZM5G841900_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G841900_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57070.1 (Oryza sativa), 3'ss of exon 2
ggcatctttgctgcaggaagtcgtcgaacatagtcacaatgtttttttaaaaagcagaagtttctaaaccgctgat--tcctgaaagctgtcactt---ttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAG
      || |  |||        | |      ||   |  | || | | | |  |    |  | ||| | ||| ||  |  || | |   |  ||    |||||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||
---tggttagtggcactggtcaattgtctgctgtt-tagggattatctgagatacttttgcatgtaa-ctgctcataattttgcatgtgctggctgacattgcagGTGACGAAGGTTATGGCTAGGATGGCTTCTGCAGATATAATGTGTGTTGACTCAAAGGCTGTCAAGGAAAAGTTCACTGGCATGATAAG

upper sequence: GRMZM5G841900_T04 (Zea mays), 3'ss of exon 2
lower sequence: Vv04s0043g00400.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------------------------------------ggcat-ctttgctgcaggaagtcgtcgaacatagtcacaatg--tttttttaaaaagcagaagtttctaaaccgctgattcctgaaagctgtcacttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAG
                                                                                           ||  |||  ||     | |    | |  |  | | ||    || || |||| || |     ||    |   |  |    |     ||| |  | |   |||| || || |||||||||||||||||||| || ||||| |||||||||| | | ||| || |  ||||||| || ||||| || || ||
gtaagtttcttcaatatttatctctgttcatttattttgatgatctcttgtatatacatgctgcaacttattcatcaatcagcagcattatatgtttttttgggttcaattcaaggatttcattataagaatttcttctaaacagaattgagtttgggatgaccaagatttatcctctggc-ttatgatagGTTACTAAAGTTATGGCTAGAATGGCCTCAGCTGATATAATGTGTGTTGGCCCCAAGTCTGTGCGAGAAAAATTTACTGGAATAATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211118858|gb|FL110173.1|FL110173
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|148935198|gb|EC879233.2|EC879233
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|60336704|gb|DN203677.1|DN203677
EST:     ACAAGGCCCAAGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102907|gb|FK962288.1|FK962288
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|148991615|gb|EE033149.2|EE033149
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118854|gb|FL110169.1|FL110169
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102910|gb|FK962291.1|FK962291
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|78180011|gb|DV550384.1|DV550384
EST:     CGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: CGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118860|gb|FL110175.1|FL110175
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|12046009|gb|BF728044.1|BF728044
EST:     CCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: CCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211326704|gb|FL445906.1|FL445906
EST:     GTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: GTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|32796285|gb|CD948521.1|CD948521
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118861|gb|FL110176.1|FL110176
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118856|gb|FL110171.1|FL110171
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTYGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|60341943|gb|DN208916.1|DN208916
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118859|gb|FL110174.1|FL110174
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102909|gb|FK962290.1|FK962290
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|28873659|gb|CB329617.1|CB329617
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211118857|gb|FL110172.1|FL110172
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|148965500|gb|EE016317.2|EE016317
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|6827420|gb|AW331063.1|AW331063
EST:     GCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: GCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102908|gb|FK962289.1|FK962289
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102903|gb|FK962284.1|FK962284
EST:     ACAAGGCCCATGGAGCTGTGCCACAGCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|71439027|gb|DR820077.1|DR820077
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|211102902|gb|FK962283.1|FK962283
EST:     CAAGGCCCATGGAGCTGTGCCACAGCCCGGGAAGCGTTGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGACATCATGTGTGTTGAC
genomic: CAAGGCCCATGGAGCTGTGCCGCAGCC-GGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
EST: gi|148935199|gb|EC879234.2|EC879234
EST:     ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA                         GTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC
genomic: ACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGAgtaagatgct ... acttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaaaagcagaagtttctaaaccgctgattcctgaaagctgtcacttttgcagGTAACAAAGGTTATGGCTAGAATGGCCTCTGCAGATATCATGTGTGTTGACTCAAAGGCTATCAGAGAAAAGTTCACTGGCATGATAAG
                                           tcactttt  CT-rich tract
               tttctaaa  TA-rich tract