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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gacaaaggaagcatttagcaagcttccgaagtggaagcagaacaggctaaAAATTGCTCTTCAACTTTTTTAGCCTGATCATCAAC

Basic information

species Zea mays
transcript GRMZM5G841727_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33094469|gb|CF054463.1|CF054463
EST:     ACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGAT                         AAATTGCTCTTCAACTTTTTTAGCCTGATCATCAAC
genomic: ACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGATgacaaaggaa ... aacaggctaaAAATTGCTCTTCAACTTTTTTAGCCTGATCATCAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaaggaagcatttagcaagcttccgaagtggaagcagaacaggctaaAAATTGCTCTTCAACTTTTTTAGCCTGATCATCAAC
                          attta  TA-rich tract