1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgtgctgatggaaatttttgcaaatagaaatataaaaattattgtagcttactttttctctgtaaaaaatcccgtgcaatgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGTTGATACTGTGGCCACAAGAGTTGAATCTCTGACTATAAATGAAGATGT
species | Zea mays |
transcript | GRMZM5G841727_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGEST: gi|32841348|gb|CD981029.1|CD981029
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGEST: gi|32841440|gb|CD981121.1|CD981121
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGEST: gi|33094469|gb|CF054463.1|CF054463
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
aaaattattgtagcttactttttctctgtaaaaaatcccgtgcaatgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGTTGATACTGTGGCCACAAGAGTTGAATCTCTGACTATAAATGAAGATGT
agcttac putative branch site (score: 3)
tgtaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctgatggaaatttttgcaaatagaaatataaaaattattgtagcttactttttctctgtaaaaaatcccgtgcaatgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTGTTGATACTGTGGCCACAAGAGTTGAATCTCTGACTATAAATGAAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG