1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGCCAGAAGATGACGAGGGCCTTCCGATTTACCTGTATGAACGTCTGAAGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttactgatctcacaatacttatcttcaatttggtgtgcagacctacttatctttaacttggtgtgcag
species | Zea mays |
transcript | GRMZM5G841727_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAG ACCTACTTATCTTCAACTGAGTTCAAAGEST: gi|32841348|gb|CD981029.1|CD981029
genomic: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttact ... tggtgtgcagACCTACTTATCTTCAACTGAGTTCAAAG
EST: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAG ACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGATEST: gi|32841440|gb|CD981121.1|CD981121
genomic: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttact ... tggtgtgcagACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGAT
EST: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAG ACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGATEST: gi|33094469|gb|CF054463.1|CF054463
genomic: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttact ... tggtgtgcagACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGAT
EST: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAG ACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGAT
genomic: AGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttact ... tggtgtgcagACCTACTTATCTTCAACTGAGTTCAAAGAGAAGTTTGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCCAGAAGATGACGAGGGCCTTCCGATTTACCTGTATGAACGTCTGAAGACCACAGCTGCTGATCCTGTTACTGAAATTGATGTCACGAGGCGAGAGgtgatttactgatctcacaatacttatcttcaatttggtgtgcagacctacttatctttaacttggtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT