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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGATCCGTCGAATACTGCTTCTAAGTCACCTGCAATTGCTGCTCTGGCTGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctgatggaaatttttgcaaatagaaatataaaaattattgtagcttactttttctctgtaaaaaatcccgtgcaatgcaaattag

Basic information

species Zea mays
transcript GRMZM5G841727_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841054|gb|CD980735.1|CD980735
EST:     TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG                         GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: gi|32841348|gb|CD981029.1|CD981029
EST:     TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG                         GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: gi|32841440|gb|CD981121.1|CD981121
EST:     TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG                         GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
EST: gi|33094469|gb|CF054463.1|CF054463
EST:     TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAG                         GTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG
genomic: TGGTTCTTTGGATCACCCTTCTCAAACTCCTGCTCTAGAATTCATGAAAGgtatgtgctg ... tgcaaattagGTGGCTCCGAGTCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGAAGGTG