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gtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
species | Zea mays |
transcript | GRMZM5G840928_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76282803|gb|DV022371.1|DV022371
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTTTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|50330426|gb|CO525552.1|CO525552
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGEST: gi|60400995|gb|DN233802.1|DN233802
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAG
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|89249729|gb|DY621515.1|DY621515
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: ACGTAGATGAG-AAAGTGCTTCTGAGCAGCTAATCGCACTTTTGC-AAAA AATTGGTGATGTAACAATAATGEST: gi|76016158|gb|DT943328.1|DT943328
genomic: ACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTT-GCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATG
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|211044162|gb|FL460073.1|FL460073
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|94474415|gb|EB703373.1|EB703373
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|71448822|gb|DR829872.1|DR829872
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|71766336|gb|DR964273.1|DR964273
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTTTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76011914|gb|DT939084.1|DT939084
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76020591|gb|DT947761.1|DT947761
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76018446|gb|DT945616.1|DT945616
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|60345505|gb|DN212478.1|DN212478
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|76282804|gb|DV022372.1|DV022372
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|78122651|gb|DV541035.1|DV541035
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|60400210|gb|DN233017.1|DN233017
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|78122650|gb|DV541034.1|DV541034
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
tgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
tttttgtct CT-rich tract
taactaatgttttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT