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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGGCGTCCGCCGGGACGGTGTACGAGGCGGACGCGGAGGCCGTCGTGCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccgccgtcgcccatcgtggtctcctcacgcgctctgctctatgtcccagtgtgtttcttgcggtcaggctgtcgatgcgcgcggcgtgtttga...

Basic information

species Zea mays
transcript GRMZM5G840928_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840928_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g17610.1 (Oryza sativa), 5'ss of exon 1
ATGGCGGCGTCCGCCGGGACGGTGTACGAGGCGGACGCGGAGGCCGTCGTGCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccgccgtcgcccatcgtggtctcctcacgcgctctgctctatgtcccagtgtgtttcttgcggtcaggctgtcgatgcgcgcggcgtgtttga-------
  |  | || |  | ||  | ||||||||||||||||| ||||| || || ||||||||||| ||| | |||||||||||  | |||||||||||||||||| ||      || | || |||     |  |||  |||| || |    ||    | |  |  |  || |||   ||||  ||||||| |   |||||||        
GCGATGTCGGCATCGGGCCCCGTGTACGAGGCGGACGCTGAGGCGGTGGTCCGCCGGATCACCCCGCCGCTCGACCGCGCGCGCCACAAGGGCCAGGCAGgtgagccagcgcgacccctatc-----cctctcgtgcgcgctccggggtggtggatttcgggt--tgtggtgttgctgatgatgcgctctctgtgtttgcgggattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76020592|gb|DT947762.1|DT947762
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|76011915|gb|DT939085.1|DT939085
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|71766337|gb|DR964274.1|DR964274
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|101395549|gb|EB819702.1|EB819702
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|50330426|gb|CO525552.1|CO525552
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|89249729|gb|DY621515.1|DY621515
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|76016158|gb|DT943328.1|DT943328
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211190739|gb|FL216448.1|FL216448
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|89759085|gb|DY688018.1|DY688018
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211152681|gb|FL231436.1|FL231436
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|71448822|gb|DR829872.1|DR829872
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|89252939|gb|DY624725.1|DY624725
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|71767740|gb|DR965677.1|DR965677
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|101385680|gb|EB814888.1|EB814888
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|89247422|gb|DY619208.1|DY619208
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211190744|gb|FL216453.1|FL216453
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|76018446|gb|DT945616.1|DT945616
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|76282804|gb|DV022372.1|DV022372
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211190740|gb|FL216449.1|FL216449
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211190742|gb|FL216451.1|FL216451
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|76912720|gb|DV164861.1|DV164861
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
EST: gi|211190743|gb|FL216452.1|FL216452
EST:     GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAG                         GGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT
genomic: GCGCCGGATCACGCCGGCACTCGACCGCGCCAGACACAAGGGCCAGGCAGgtcagtaccg ... atgtcctcagGGAAGATAGCAGTAATCGGAGGATGTCGTGAGTACACTGGAGCTCCTTATT