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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatggagttatttatttgttcttttttctttagcttcagttatgagtcatttaaactcagtgtgtctgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGA

Basic information

species Zea mays
transcript GRMZM5G840928_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840928_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g17610.1 (Oryza sativa), 3'ss of exon 5
gtaatacatggagttattt-atttgttcttttttctttagcttc--agttatgagtcatttaaactcagtgtgtctgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGA
|||  |  ||   || ||| |           | ||| |  ||   | ||||||           |   | |   || | | ||||||||||| || ||| ||| ||||||||||| ||||||||| || |||   ||||||||  ||||||||||||| || |||||||| |||||||| ||||
gtaccatttgacttttttttaaaaaaaaaacatacttgaaattataaattatgaacaggacttgatattttttagtgatctgcagGATGGCCTTTTCCTTATAACCAATAACCTTAGTCTTGTTGAGGGTAACTTGCTTGCCATCCTAACACCAAATGTATACGAGTACAAACGTCTTGTCCAGA

upper sequence: GRMZM5G840928_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA07G38750.1 (Glycine max), 3'ss of exon 6
------------------------gtaatacatggagttatttatttgttcttttttctttagctt--cagttatgagtcatttaaactcagtgtgtctgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGA
                         |   ||| ||  | ||| |  ||| | | ||  || |  ||  || |  ||      | ||| |   || | ||   ||||||||||| || |||||||| |  ||||| ||| | ||||||   ||  |  |  | ||  ||||||||||||||||| |||| || ||||||||||||||||
gtatgtatatagaattttagacatctggcacaaggtctgattaacatgtgcatattctttaactttttcactcttgttctgataaaattt--tgggcct-tgtttcagGATGGACTTTTTCTTGTTACAAATAATCTTGAACTTGTTAGTGGCTATGCCTTAGCTGTTTTAACACCAAATGTCAATGAATATAAGCGTCTTGTTCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71763117|gb|DR961054.1|DR961054
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76282803|gb|DV022371.1|DV022371
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76011915|gb|DT939085.1|DT939085
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|71766337|gb|DR964274.1|DR964274
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTNGT-GAAGGAAACCC
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTT-GTTGAAGGAAACCC
EST: gi|101395549|gb|EB819702.1|EB819702
EST:     ATATCCTGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTAATTCTTGTAAACAATAACCTTAATCTTGTTGAAAGGAA
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAA-GGAA
EST: gi|50330426|gb|CO525552.1|CO525552
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|60400995|gb|DN233802.1|DN233802
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|89249729|gb|DY621515.1|DY621515
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76016158|gb|DT943328.1|DT943328
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|71448822|gb|DR829872.1|DR829872
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|71766336|gb|DR964273.1|DR964273
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76011914|gb|DT939084.1|DT939084
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76020591|gb|DT947761.1|DT947761
EST:     ATATCATGAGGCACGCACGGCAGGCTAATATTCCAACTGTTGTGGAGGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|89252939|gb|DY624725.1|DY624725
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|71767740|gb|DR965677.1|DR965677
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76018446|gb|DT945616.1|DT945616
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|60345505|gb|DN212478.1|DN212478
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76282804|gb|DV022372.1|DV022372
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|78122651|gb|DV541035.1|DV541035
EST:     ATATCATGAGGCACGCACGACGGGCTAATATTCCAACTGTTGGGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|60400210|gb|DN233017.1|DN233017
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|76912720|gb|DV164861.1|DV164861
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
EST: gi|78122650|gb|DV541034.1|DV541034
EST:     ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGG                         GATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT
genomic: ATATCATGAGGCACGCACGACAGGCTAATATTCCAACTGTTGTGGATGGGgtaatacatg ... tgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctttagcttcagttatgagtcatttaaactcagtgtgtctgcttttcagGATGGCCTATTTCTTGTAAACAATAACCTTAATCTTGTTGAAGGAAACCCTCTTGCCATTTTAACACCAAATGTCTATGAGTACAAGCGTCTTGTTCAGA
                                           tctgcttttc  CT-rich tract
                         tcatttaaa  TA-rich tract