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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtgcctgcacagcgtcttgaacgatctgtgctcaagttcttcgttctgatgtgctgctccatctttttttttttaccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGTCATGCACGCGGAAGCCTAATAATGTTTATATGTCTGTTGAACAGGGTGT

Basic information

species Zea mays
transcript GRMZM5G840928_T04
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71763117|gb|DR961054.1|DR961054
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATTTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|76282803|gb|DV022371.1|DV022371
EST:     AACAAGAGATCGACTGTCACCTTTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATTTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|76018445|gb|DT945615.1|DT945615
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|76016157|gb|DT943327.1|DT943327
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|60400995|gb|DN233802.1|DN233802
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|211044162|gb|FL460073.1|FL460073
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|94474415|gb|EB703373.1|EB703373
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATTTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|71766336|gb|DR964273.1|DR964273
EST:     AACAAGAGATCGACTGTCACCTTTGATATCATTGAGTTTTTGGGCAAAAG                         CTTGGAAGATATTTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|211044163|gb|FL460074.1|FL460074
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|32933908|gb|CF038720.1|CF038720
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTGGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|76011914|gb|DT939084.1|DT939084
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|76020591|gb|DT947761.1|DT947761
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|60345505|gb|DN212478.1|DN212478
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|89249188|gb|DY620974.1|DY620974
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|60400210|gb|DN233017.1|DN233017
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|4680975|gb|AI629645.1|AI629645
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|78122650|gb|DV541034.1|DV541034
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
EST: gi|50323071|gb|CO518197.1|CO518197
EST:     AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAG                         CTTGGAAGATATTTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT
genomic: AACAAGAGATCGACTGTCACCTCTGATATCATTGAGTTCTTGGGCAAAAGgtctgtgtgc ... taccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcaagttcttcgttctgatgtgctgctccatctttttttttttaccttgcagCTTGGAAGATATCTGCCCTGCCGAGCACTAGCTCCTGCCAGTAATTGTAGTCATGCACGCGGAAGCCTAATAATGTTTATATGTCTGTTGAACAGGGTGT
               ttctgat  putative branch site (score: 3)
                       tgctgctccatctttt  CT-rich tract
                                atcttttttttttta  TA-rich tract