1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttttacttttgaaactttctaagttttcatgtccatacttattttttaattttaatctcttctgagttttgattatttataactcttatgtgtggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTAGTGAAGGAAACTGCAAA
species | Zea mays |
transcript | GRMZM5G840435_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCAGGTCATCAGAGCCCGCTTGCAG CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTAEST: gi|211238866|gb|FL413554.1|FL413554
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
EST: CCAGGTCATCAGAGCCCGCTTGCAG CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTAEST: gi|211152599|gb|FL451785.1|FL451785
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
EST: CCAGGTCATCAGAGCCCGCTTGCAG CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
attttaatctcttctgagttttgattatttataactcttatgtgtggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTAGTGAAGGAAACTGCAAA
ttataac putative branch site (score: 30)
ttttcc putative PPT
ttttgattatttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttacttttgaaactttctaagttttcatgtccatacttattttttaattttaatctcttctgagttttgattatttataactcttatgtgtggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTAGTGAAGGAAACTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA