1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatcctcgcctcaggctacatactctaggatttcagagactaagaacgacgaacggtaactgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgttggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCATGCTGTGTACACTATCACACGATCTGAG
species | Zea mays |
transcript | GRMZM5G840435_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCEST: gi|31406342|gb|CD485074.1|CD485074
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCEST: gi|28909797|gb|CB331105.1|CB331105
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCEST: gi|71313594|gb|DR793373.1|DR793373
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
ctctctctctctctctctctctctctctctctctctctctcgtgttggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCATGCTGTGTACACTATCACACGATCTGAG
tctctctctctctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcctcgcctcaggctacatactctaggatttcagagactaagaacgacgaacggtaactgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgttggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGCATGCTGTGTACACTATCACACGATCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG