1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgatttgggctgcttaacttttagcaacatgaacgctacctataatatatgtttattagcatttcagattttcaattgacatgagatgcattttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCATCCAGTCCATCATCTCATCTCAGCTGCAGAAGCAG
species | Zea mays |
transcript | GRMZM5G840435_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCAEST: gi|31406342|gb|CD485074.1|CD485074
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCAEST: gi|28909797|gb|CB331105.1|CB331105
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCAEST: gi|71313594|gb|DR793373.1|DR793373
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
tatatgtttattagcatttcagattttcaattgacatgagatgcattttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCATCCAGTCCATCATCTCATCTCAGCTGCAGAAGCAG
aattgac putative branch site (score: 14)
catttttt putative PPT
atgcattttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttgggctgcttaacttttagcaacatgaacgctacctataatatatgtttattagcatttcagattttcaattgacatgagatgcattttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCATCCAGTCCATCATCTCATCTCAGCTGCAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
tgatttg
- - - - gctgctt
- - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agatgca