1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttagagtgcttagttattcttttcttttgttttatgcatatggatggttgacaaatctagttcatgcctccatgtttgtttattctgtcatgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTATGATATTCTTTAAAAGTGCACAATCAAGGGCAGACGACGCAGGAGGCG
species | Zea mays |
transcript | GRMZM5G840435_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG GTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTEST: gi|71313594|gb|DR793373.1|DR793373
genomic: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtattt ... tgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
EST: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG GTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
genomic: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtattt ... tgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
ggttgacaaatctagttcatgcctccatgtttgtttattctgtcatgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTATGATATTCTTTAAAAGTGCACAATCAAGGGCAGACGACGCAGGAGGCG
ggttgac putative branch site (score: 38)
tttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagagtgcttagttattcttttcttttgttttatgcatatggatggttgacaaatctagttcatgcctccatgtttgtttattctgtcatgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTATGATATTCTTTAAAAGTGCACAATCAAGGGCAGACGACGCAGGAGGCG
- - -gtgctta
- - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - -atgcata
- - - - - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccatg