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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcctcagcacatgagctctcttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcag

Basic information

species Zea mays
transcript GRMZM5G825090_T03
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467263|gb|CF244312.1|CF244312
EST:     ACATTGCTTCAAAAGTCCCCCCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
EST: gi|67011570|gb|CO440319.1|CO440319
EST:     ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTTCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG