Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcag

Basic information

species Zea mays
transcript GRMZM5G825090_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825090_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 5'ss of exon 10
GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
|||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  |||||||||||||  ||| | || |||    ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  | | || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---

upper sequence: GRMZM5G825090_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 9
--------------------------------GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
                                |||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  |||||||||||||  ||| | || |||    ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  | | || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
CAGAATCTGACCGGTGCATGCTTTATCATCAGGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467263|gb|CF244312.1|CF244312
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATTTGTTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|67011570|gb|CO440319.1|CO440319
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT