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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaatcctcagcacatgagctctcttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG

Basic information

species Zea mays
transcript GRMZM5G825090_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G804772_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 3'ss of exon 9
gtctgaatcctcagcacatgagctctctt---cttactat-----acaggtcgcg--tggactctgaa--tagctgatggtctgtttttcg-cagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
|||||||||||| ||| ||     |  ||    || |  |        | |  |     ||  | |||  |  | | ||     ||| ||  ||||||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  ||||||||||
gtctgaatcctctgcatattgatacgtttgcatttgccgtttcctgtggcttactgccagatccagaatctgaccggtgcatgctttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467263|gb|CF244312.1|CF244312
EST:     ACATTGCTTCAAAAGTCCCCCCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
EST: gi|67011570|gb|CO440319.1|CO440319
EST:     ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTTCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
                                         tctgtttttc  CT-rich tract
                                           tgttttt  TA-rich tract