Sequence
atgc intronic sequence ATGC exonic sequenceGTAGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattcaacacatctccttttcacttttgctcttaaaggttgttcctccctatttgtgggggaaaaggcttgtcttggtttatccccgagacccca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G825090_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 6
GTAGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattcaacacatctccttttcacttt--tgctcttaaaggttgttcctccctatttgtgggggaaaaggcttgtcttggtttatccccgagacccca
|| ||||||||||||||||| |||||||||||||| |||| |||||||||||| || || || | |||||||| |||| | || || | || | || | | | | | || | || | |||| ||
GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAATACCTGGCCGACAAATATGgtgcctatttcatctctcatctgtacatctccctgtccctggggcctcctactaacctcctgcatttgcccttgcttttcag--------------------
upper sequence: GRMZM5G825090_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv08s0007g03250.t01 (Vitis vinifera), 5'ss of exon 6
GTAGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgt---attcaacacatctccttttcact--tttgctcttaaaggttgttc--ctccctatttgtgggggaaaaggcttgtcttggtttatccccgagacccca
|| |||||||||||||| || || ||||||||||| |||||||| || || ||| | | || | ||||||| | ||| || |||| ||| |||| | |||| | | | || || | | | | ||| | ||
GTGGATCCAAACACAGGAGTTGCAATGTATGAATCGGATGACATAATTAAGTATTTGGTTGGGAAATATGgtatacctcattacaccaatctagtttcggtggatttgtttcaggcagttgattgttttctcatcagttaatcatcaataaattgcacatctatgacaga-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33467263|gb|CF244312.1|CF244312EST: CGCCATGTATGAATCCGATGACATCATAAAATATTTAGCTGATACATATG GCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
genomic: CGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattc ... tttttcttagGCGATGGAACTGTTCCAATTATGCTATCACTTGGTCTGTTGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAATATCTAGCTGATACATATGgtgtgtattcaacacatctccttttcacttttgctcttaaaggttgttcctccctatttgtgggggaaaaggcttgtcttggtttatccccgagacccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT