1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttattactttttgcagacctattttcagttctagcccctcccttcccatttcgattttgtttgttaagtcctcccgatctgtatttattaacttgcatgatgcgggtcaccgaagACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAGGGTGGTACCGGTTCGTTCCCCAGAATCTATGTGCTTGTTAACCTGAAGG
species | Zea mays |
transcript | GRMZM5G814700_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAA ACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAGEST: gi|22472602|gb|BU037082.1|BU037082
genomic: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAAgttattactt ... gtcaccgaagACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAG
EST: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAA ACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAGEST: gi|26558461|gb|CA830696.1|CA830696
genomic: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAAgttattactt ... gtcaccgaagACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAG
EST: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAA ACTTAGGCTGCTGCAGAA
genomic: ACTGAGTAGCTGAACTGCAGCTTGCTGCATCGCTAACCACAAAGGCCCAAgttattactt ... gtcaccgaagACTTAGGCTGCTGCAGAA
ttgttaagtcctcccgatctgtatttattaacttgcatgatgcgggtcaccgaagACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAGGGTGGTACCGGTTCGTTCCCCAGAATCTATGTGCTTGTTAACCTGAAGG
tattaac putative branch site (score: 7)
atctgtatttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattactttttgcagacctattttcagttctagcccctcccttcccatttcgattttgtttgttaagtcctcccgatctgtatttattaacttgcatgatgcgggtcaccgaagACTTAGGCTGCTGCAGAAGTTTTGTCTCTGGCGGGAAGCTATATGCAAGAGGGTGGTACCGGTTCGTTCCCCAGAATCTATGTGCTTGTTAACCTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG