Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaattattcaattaaataagtgctactgtatcgtgcagttatggctattttgacttttgatcaacttatatggcttgccaaatttgtacttcgataaaatatccatctggaacatggatgtgtgctatcctgagctattttttcatcgtttttcag

Basic information

species Zea mays
transcript GRMZM5G814700_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 13
AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaattatt--caattaaataagtgctactgtatcg--tgcagttatggctattttgacttttgatcaacttatatggcttgccaaatttgtacttcgataaaatatccatctggaacatggatgtgtgctatcctgagctattttttcatcgtttttcag
|| || || ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||  || |  | ||       |  |  |||    |  ||||  |    |        ||  ||  | |   |   |   |||||      | || |                                                                
AACAAGTGCAATGTAGGCTATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagatactatctatagggcctgcccagctgagctggctgcaactgcatcacagccagctgctgcccgaagca---gcaatgccagtggcttgctcctgc-------------------------------------------------------------

upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 12
AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaattattcaattaaataagtgctactgtatcgtgcagtt-atggctattttgacttttgatcaacttatatggcttgccaaatttgtacttcgataaaatatccatctggaacatggatgtgtgctatcctgagctattttttcatcgtttttcag
|||||||| |||||||| ||||||||||||||| | | | | ||| |  ||||  ||||||||||| ||||   |  | |  |  |   || |  | | |     ||| || | |||  |  ||   |||| ||  ||     |      |     ||   | ||  | |   || |                                                     
AATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctttgtacctttttatgatcaatt----tgtgtagatgatgtatcattgttctttagaaaaaaaggaaaaaagcgtttggttacaagtttaaaaccttaacag---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542340|gb|BU092793.1|BU092793
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGGTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
EST: gi|22472602|gb|BU037082.1|BU037082
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
EST: gi|26558461|gb|CA830696.1|CA830696
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGCTTAACAGCGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
EST: gi|211008041|gb|FL362435.1|FL362435
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
EST: gi|33093066|gb|CF053060.1|CF053060
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
EST: gi|32867814|gb|CF007496.1|CF007496
EST:     ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAG                         AGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA
genomic: ATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaatta ... cgtttttcagAGTTTTAATGGTAAAAAGTGGGAGAAGTTTAACAGTGAGAAGGTGGCATCA