Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttgagatcactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG

Basic information

species Zea mays
transcript GRMZM5G814700_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814700_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 3'ss of exon 11
---------------gtatgttttgagatcactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG
               || |  |||  | ||| |   |||| |  | | |||   |||| | ||  | |  ||  | |  ||||  ||| ||   | || || |||||| ||||| ||||||||  | |||||||||||||||| |||||| || |||||||||||||||||| | |||||||| || |||
gtatgtgtaacaactgt-taatttaggttcattt--ttttttcttgcctttgccttct-tttctgtcattttcatgtatttctaattgact---tgggattccagGTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACTTATGATTTTATTTACCTACCAATTGACTTCAAG

upper sequence: GRMZM5G814700_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G28860.1 (Glycine max), 3'ss of exon 3
----------gtatgttttgagat-cactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG
          | |  |   ||  |    |||||| ||  |  ||||||  |  | | |   | |||  ||||||  |  |  ||  | | |||  || ||||||||| ||||||||||| || ||||| ||||||||| | ||||  || |||||||||||| ||||  ||||||||||||| |  
agttttttctgaaaatgaagaattatgttcagttctacacctcatttacataattttttcttgaaacatctttttctgggactgatt-tgttgtcttgcagGTATACATCCAAGATGCTGTTAGCTGCAATTGATGAACGCCATAGAGGAACTTATGATTTTGTTTATCTGCCAATTGATTTCAGA

upper sequence: GRMZM5G814700_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 3'ss of exon 11
-------gtatgttt-tgagatcactcagttttat-gct-acatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgg--gtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG
        | | ||| ||   | || ||   | || ||| | |||  ||||   ||    |   ||||||    || || || | | |  |||   ||  |||||||| || || |||||  | ||||| |||||||||  ||||   || ||||||||||||||||| ||||||||||| || || 
cattcatttctatttgtggttttacacaccataattgctcagattcctgttgcatcctc-tgttatttctgcc-ttttgatttgatataatggtaattgtagGTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAA

upper sequence: GRMZM5G814700_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv00s0239g00110.t01 (Vitis vinifera), 3'ss of exon 1
gtatgttttgagatcactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgg--gtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG
                                     ||||   ||    ||  ||||||    || || || | | |  |||   ||  |||||||| || || |||||  | ||| | |||||||||   |||   || ||||||||||||||||| ||||||||||| || || 
-------------------------------------tgttgcatcctc-tattatttctgcc-ttttgatttgatataatggtaattataggtatacttcaaaaatgcttcttgctacaattgatgaacaccattgagGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542340|gb|BU092793.1|BU092793
EST:     ACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: ACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|91877858|gb|EB407815.1|EB407815
EST:     CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCCAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|211008041|gb|FL362435.1|FL362435
EST:     CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|33093066|gb|CF053060.1|CF053060
EST:     CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|32867814|gb|CF007496.1|CF007496
EST:     CGGGGGGAAGACTCACGAACTACACTCATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|71772002|gb|DR969939.1|DR969939
EST:     CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: gi|32837478|gb|CD977156.1|CD977156
EST:     CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA                         GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG
                                       ctctttt  CT-rich tract
             aataaaatttcttttg  TA-rich tract