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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaatttaactcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag

Basic information

species Zea mays
transcript GRMZM5G814700_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 12
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaatttaactcata----------accttgtattagttgagacta-cttgtctgctcatgttactaaatgagatcaatctc-cttttcag
||| ||||| ||||||||  | |||||||||||||||| |||||| || |||||||||||||||||| | |||||||| || |||||    |  |||||  |  ||          || |  |||| ||| |||    |||| ||  ||   ||||| |||| |||   ||   ||||||||
GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACTTATGATTTTATTTACCTACCAATTGACTTCAAGgtgatctagatttatttagtatgcaactaatacatcatatttgttcagatagtcttgcctaatcgaattactgaatgggatgtgtcctacttttcag

upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G28860.1 (Glycine max), 5'ss of exon 4
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaatttaactcataaccttgtattagttga--gactacttgtctgct------catgttactaaatgagatcaatctccttttcag-------
|||||| ||||||||||| || ||||| ||||||||| | ||||  || |||||||||||| ||||  ||||||||||||| |  | |  |    ||    |  |||  |  |   |||| |  | | | ||||    |       || || ||| |  | ||  ||     ||||         
GTATACATCCAAGATGCTGTTAGCTGCAATTGATGAACGCCATAGAGGAACTTATGATTTTGTTTATCTGCCAATTGATTTCAGAgcaagtgcttttctctttttaaaatacttggagtttatggtccatttgttgtatagagaatatctttctagaaaatatttattgtactttctctgttttg

upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G51690.1 (Glycine max), 5'ss of exon 3
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaatttaactcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag--
|||||| ||||||||||| || ||||| ||||||||  | ||||  || |||||||||||| | ||  ||||||||||||| | || | ||     ||  ||| |    ||  | || |||    |  | |||   |  | |||      ||||  ||  | ||    |   
GTATACATCCAAGATGCTGTTAGCTGCAATTGATGAGTGCCATAGAGGAACTTATGATTTTgtctatctgccaattgatttcagggcaaat---gcttttctctt----tttaaatacttggagtttatggtccatttgttttata----gagaataactttctagaaaaat

upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaattta-actcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag-------------
|||||| || || |||||  | ||||| |||||||||  ||||   || ||||||||||||||||| ||||||||||| || || |||  |  |  ||  |   ||    ||   || |   |||  |          ||| |    | ||  |||    ||  ||   |              
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggattgaatttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag

upper sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s0239g00110.t01 (Vitis vinifera), 5'ss of exon 2
GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaattta-actcataaccttgtattagttgagactacttgtctgctcatgttactaaatgagatcaatctccttttcag-------------
                                               | ||||||||||||||||| ||||||||||| || || |||  |  |  ||  |   ||    ||   || |   |||  |          ||| |    | ||  |||  | ||  ||   |              
-----------------------------------------------GAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaatcttgcatggatggaatttctttggggaagaaaatcacatatggcatatg--cacatctgattcacctttttacaaattctgttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542340|gb|BU092793.1|BU092793
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|91877858|gb|EB407815.1|EB407815
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTTC-TCAACATG
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTT-CATCAACATG
EST: gi|22472602|gb|BU037082.1|BU037082
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|26558461|gb|CA830696.1|CA830696
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|211008041|gb|FL362435.1|FL362435
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|33093066|gb|CF053060.1|CF053060
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|32867814|gb|CF007496.1|CF007496
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
EST: gi|71772002|gb|DR969939.1|DR969939
EST:     AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTTAG                         AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT
genomic: AAAGTCATAAGGGCACTTATGATTTTATTTACTTGCCAATTGATTTTAAGgtagattgaa ... tccttttcagAATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCAT