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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTTGGTCCGGCATGCTTTGTGGTATCACCCTTCAGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacctactagcgtcatgttctttgttttcttcttctttcccttacaatcccttagttcttgcaagcagaggtgtacatataactaaattctggtgattgactgatcttctttgttctggcaaacaactgcag

Basic information

species Zea mays
transcript GRMZM5G801875_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93283393|gb|EB675657.1|EB675657
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|88754717|gb|DY538858.1|DY538858
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|101400896|gb|EB822137.1|EB822137
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149071073|gb|EE159475.2|EE159475
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCCCAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|78113347|gb|DV531739.1|DV531739
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|78112237|gb|DV530631.1|DV530631
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149071668|gb|EE160059.2|EE160059
EST:     AGACGCTCATCTTGTTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCCCAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|93281974|gb|EB674238.1|EB674238
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|50325176|gb|CO520302.1|CO520302
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|148981022|gb|EE027385.2|EE027385
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCCCAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149107618|gb|EE189500.2|EE189500
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|74232274|gb|DT640188.1|DT640188
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|93014014|gb|EB639534.1|EB639534
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|74240798|gb|DT648712.1|DT648712
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCCCAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|211438645|gb|FL363314.1|FL363314
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|71766953|gb|DR964890.1|DR964890
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|86472261|gb|DY238631.1|DY238631
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|78084110|gb|DV512503.1|DV512503
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|78109341|gb|DV527757.1|DV527757
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|8577251|gb|BE129888.1|BE129888
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|101385095|gb|EB814593.1|EB814593
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|76012741|gb|DT939911.1|DT939911
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|110219323|gb|EC901221.1|EC901221
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|101393242|gb|EB818552.1|EB818552
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|211531308|gb|FL320549.1|FL320549
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|78180304|gb|DV550677.1|DV550677
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149021961|gb|EE154491.2|EE154491
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|110195775|gb|EC877672.1|EC877672
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|12047293|gb|BF729432.1|BF729432
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGGACAAGCTTCAGGCCGT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGT
EST: gi|78075389|gb|DV503823.1|DV503823
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|76292460|gb|DV032028.1|DV032028
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149084838|gb|EE174343.2|EE174343
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|148942624|gb|EC887643.2|EC887643
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|84969426|gb|DW467863.1|DW467863
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149089699|gb|EE178961.2|EE178961
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|32863635|gb|CF003317.1|CF003317
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|88753828|gb|DY537969.1|DY537969
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|211531307|gb|FL320548.1|FL320548
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|101392885|gb|EB818373.1|EB818373
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|211248605|gb|FL451981.1|FL451981
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|71771581|gb|DR969518.1|DR969518
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149108091|gb|EE292442.2|EE292442
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|50336552|gb|CO531678.1|CO531678
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGG
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGG
EST: gi|78079087|gb|DV507499.1|DV507499
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|110518216|gb|EE022803.1|EE022803
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|149084389|gb|EE173839.2|EE173839
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAGAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|148934493|gb|EC878534.2|EC878534
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
EST: gi|71332337|gb|DR803108.1|DR803108
EST:     AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAG                         GCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT
genomic: AGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacc ... acaactgcagGCCGCACAAGCTTCAGGCCGTGTGCAAAAGTGGGGCGGCAAAGGCACCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGATTTGGTCCGGCATGCTTTGTGGTATCACCCTTCAGACGCTCATCTTGCTAGGTGTGGTTTGGAGGACAGATTGGAAAGCAGAGgtaaacaacctactagcgtcatgttctttgttttcttcttctttcccttacaatcccttagttcttgcaagcagaggtgtacatataactaaattctggtgattgactgatcttctttgttctggcaaacaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA