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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtccagatatggcctctatgtgtactatataatatagctcaatattctgtgctggcagaatatatgcttgctgttgccgggtactgatacagcctctgctctgttgtgttcctttgccatctaatttcag

Basic information

species Zea mays
transcript GRMZM5G801875_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101400896|gb|EB822137.1|EB822137
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|78112237|gb|DV530631.1|DV530631
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|71771582|gb|DR969519.1|DR969519
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|213170347|gb|FM187268.1|FM187268
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|74232274|gb|DT640188.1|DT640188
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|101385095|gb|EB814593.1|EB814593
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|76012741|gb|DT939911.1|DT939911
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|110219323|gb|EC901221.1|EC901221
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|31405798|gb|CD484530.1|CD484530
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|78180304|gb|DV550677.1|DV550677
EST:     CCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: CCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|149084838|gb|EE174343.2|EE174343
EST:     GCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGA
genomic: GCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCT-CCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGA
EST: gi|149089699|gb|EE178961.2|EE178961
EST:     TCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: TCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|149108091|gb|EE292442.2|EE292442
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
EST: gi|71332337|gb|DR803108.1|DR803108
EST:     ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAG                         TGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA
genomic: ATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGCTATCAGgtgcagtcca ... ctaatttcagTGTCCGAGTCTCCAACGAGCTTGGCTCCGGCCGTCCGAGGGCCGCGTGGAA