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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCATGCTCTGCCTCGAGGTATGGTACATGAGCCTGATCACCGTGCTCACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgcacgacggaggatatgctaacggtagattattagatcagaatgtttcttggattcctttgttagatcagaatgtttcttggacaaacaaagctcatctcctacataattgtgtatgtcttcag

Basic information

species Zea mays
transcript GRMZM5G801875_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101400896|gb|EB822137.1|EB822137
EST:     CCCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|78112237|gb|DV530631.1|DV530631
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|71771582|gb|DR969519.1|DR969519
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|213170347|gb|FM187268.1|FM187268
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|74232274|gb|DT640188.1|DT640188
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|101385095|gb|EB814593.1|EB814593
EST:     CAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: CAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|76012741|gb|DT939911.1|DT939911
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|110219323|gb|EC901221.1|EC901221
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|31405798|gb|CD484530.1|CD484530
EST:     GGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: GGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|149108091|gb|EE292442.2|EE292442
EST:     AGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: AGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|71448656|gb|DR829706.1|DR829706
EST:     ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: ACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
EST: gi|71332337|gb|DR803108.1|DR803108
EST:     CTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATG                         CATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC
genomic: CTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgc ... atgtcttcagCATGAACATAAACGGATGGGAGGCCATGATCTTCATCGGCCTCAATGCCGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTCATGCTCTGCCTCGAGGTATGGTACATGAGCCTGATCACCGTGCTCACCGGCGACCTGGAGGACGCCCAGATTGCCGTGGACTCACTAGGCATATGgtacgtacgcacgacggaggatatgctaacggtagattattagatcagaatgtttcttggattcctttgttagatcagaatgtttcttggacaaacaaagctcatctcctacataattgtgtatgtcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA