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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTAGGGGACCATGGTTTCCCTGTTCCAGCTGCTGTAGATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatatatctgtgatcaatcaactgtggattcatattagtcgaaagtatgttctgtcaagcagatcctgatacaagttgctttatgctctgtag

Basic information

species Zea mays
transcript GRMZM2G472991_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472991_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 6
GCTTTAGGGGACCATGGTTTCCCTGTTCCAGCTGCTGTAGATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatatatctgtgatcaatcaactgtggattcatattagtcgaaagtatgttctgtcaagcagatcctgatacaagttgctttatgctctgtag--
|||||||| |||||||| || || |||||  ||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||||||   | |||  | |||| | |  |      | |  ||         |  |||   | | ||||    |||| |||||  | || | |  | ||   
GCTTTAGGAGACCATGGATTTCCAGTTCCCACTGCTGTTGACTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCACTgtaagtg-acatc-attatcattaagttactatctaaggtt---------tgagtttctttaggcaggaattgat-caagtgccatttttccttatatag

upper sequence: GRMZM2G472991_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTAGGGGACCATGGTTTCCCTGTTCCAGCTGCTGTAGATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatatatctgtgatcaatcaactgtggattcatatta-gtcgaaagtat-gttctgtcaagcagatcctgatacaagttgctttatgctctgtag--
||||| |  || ||||||||||||||||||  ||| || || || ||| | ||||||||| | ||||||||||| || || ||||| ||||||| ||   | |   ||      | |||   | ||| | |  ||| ||   |   ||| | | ||   |  |  |     ||| |  |  || |  |   
GCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACTgtaaggattcctatccaattt-cggaatgtttttgcatttcatatcgcaacccttagtcttttatgcgtttttttttgttttttgttgcac-ctttaaattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33094905|gb|CF054899.1|CF054899
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|71429251|gb|DR810301.1|DR810301
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACG
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACG
EST: gi|93016530|gb|EB642050.1|EB642050
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|33095027|gb|CF055021.1|CF055021
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|26456479|gb|CA828062.1|CA828062
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|20301471|gb|BQ164414.1|BQ164414
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|78112924|gb|DV531318.1|DV531318
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATTCT
EST: gi|76014835|gb|DT942005.1|DT942005
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TTTGTTCA-GTGAA-GAGTTACAAAATCCAGATGACGTTTTTGACACAATT
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagT--GTTCAAGTGAAAGAGTTACAAAATCCAGATGACGTTTTTGACACAATT
EST: gi|78120952|gb|DV539336.1|DV539336
EST:     GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT                         TGTTCAAGTGAGAGAGTTACAAAATCC
genomic: GATTGCAATCGCCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCTgtaagcatat ... tgctctgtagTGTTCAAGTGAAAGAGTTACAAAATCC