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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtatatatatacatacacacaatctccctgtcctgatcttcaggcctctttgattgttgccaattgaactttctatttctttttctgttcgttgaggatgatattgattccttcatgcgcgtgtcgctgttcttgcttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA

Basic information

species Zea mays
transcript GRMZM2G471269_T05
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748263|gb|DY532404.1|DY532404
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|37392581|gb|CF633542.1|CF633542
EST:     TGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACCACATGACGTTCGCGACGATCAAA
genomic: TGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|78111058|gb|DV529455.1|DV529455
EST:     CCCGTTGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|116827409|gb|EC871310.1|EC871310
EST:     GGCG-GGCATCTC-GTGGCC-AG-CGCCGG                         G-TCACGATAAATTACTCAAAC-ACATGACGTTCGCGACGATCAAA
genomic: GGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|110533510|gb|EE037690.1|EE037690
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|211272707|gb|FL458993.1|FL458993
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTTGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|88750452|gb|DY534593.1|DY534593
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|16919289|gb|BM074120.1|BM074120
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|111145649|gb|EE257973.1|EE257973
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|78027468|gb|DV495855.1|DV495855
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|86468083|gb|DY234453.1|DY234453
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|110516814|gb|EE021401.1|EE021401
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|5108189|gb|AI739902.1|AI739902
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|211175969|gb|FL481229.1|FL481229
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaggatgatattgattccttcatgcgcgtgtcgctgttcttgcttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
           tattgat  putative branch site (score: 3)
                                       ttcttgcttc  putative PPT
          atattgatt  TA-rich tract