1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaggcaccctgcttgcgatcctattgtctgatgaatctgtctcgtgatatcatggagaaatctttttttggttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGGTCCCTCAACTTCCCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGT
species | Zea mays |
transcript | GRMZM2G471269_T05 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|78111058|gb|DV529455.1|DV529455
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|110533510|gb|EE037690.1|EE037690
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: CCACCGGAACCTGAGGTCCAGAGGCTCCCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|211272707|gb|FL458993.1|FL458993
genomic: CCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|88750452|gb|DY534593.1|DY534593
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|111145649|gb|EE257973.1|EE257973
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|78027468|gb|DV495855.1|DV495855
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|110516814|gb|EE021401.1|EE021401
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|5108189|gb|AI739902.1|AI739902
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGEST: gi|211175969|gb|FL481229.1|FL481229
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
EST: AAGTACCACCGGAACCTGACGTCCAGAGG-TACCGCGCCCTGGTGTACAG CGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
genomic: AAGTACCACCGGAACCTGACGTCCAGAGGCTACCGCGCCCTGGTGTACAGgtaaggcacc ... ttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAG
tctgatgaatctgtctcgtgatatcatggagaaatctttttttggttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGGTCCCTCAACTTCCCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGT
gtctgat putative branch site (score: 4)
agaaatcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcaccctgcttgcgatcctattgtctgatgaatctgtctcgtgatatcatggagaaatctttttttggttggttgcagCGGCGACCATGACCTGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGGTCCCTCAACTTCCCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG