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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggtgagctgttctcgtcatttcgatgctagtaccattatattgttgttgttgtcagcaatgacgagaatgatccagGCTAATTTAAAGCAAAGCGATCCATGAACTGGTGGTCAGGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACGATCGACCTCA

Basic information

species Zea mays
transcript GRMZM2G471269_T05
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748263|gb|DY532404.1|DY532404
EST:     CGCACTCGAACAGCTCTTGGGATCAAGAAG                         GCTAATTTAAAGCAAAGCGATCCATGAACTGGTGGTCAGGGAACAGTGGAC
genomic: CGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... aatgatccagGCTAATTTAAAGCAAAGCGATCCATGAACTGGTGGTCAGGGAACAGTGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatgctagtaccattatattgttgttgttgtcagcaatgacgagaatgatccagGCTAATTTAAAGCAAAGCGATCCATGAACTGGTGGTCAGGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACGATCGACCTCA
             attatattgttgtt  TA-rich tract