1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcttctccggcctcccaaatatgtatgctagcgaagctaagtacctgcaaatacacggcctgacgccttgatcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTACGCGTCTCCTGCGCCAAACGTTCTCAGCAGACCGGTGGACGGTGGTAGAA
species | Zea mays |
transcript | GRMZM2G471269_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACTTTCAACAAT CTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTACEST: gi|14203015|gb|BG836692.1|BG836692
genomic: ACACTTTCAACAATgtaagcttct ... atcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTAC
EST: CTAGTCCTGCAAACGCTCTGTGTGTTCAGGCTCTGGAHACTTTCAAAAAT CTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGAAACGTGCGTCTACEST: gi|74233921|gb|DT641835.1|DT641835
genomic: CTAGTCCTGCAAACGCTCTGTGTGCTCAGGCTCTGGACACTTTCAACAATgtaagcttct ... atcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTAC
EST: AGGCTCTGG-CACTTTCAACAAT CTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTACEST: gi|148966524|gb|EE017546.2|EE017546
genomic: AGGCTCTGGACACTTTCAACAATgtaagcttct ... atcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTAC
EST: CTAGTCCTGCAAACGCTCTGTGTGCTCAGGCTCTGGACACTTTCAACAAT CTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTAC
genomic: CTAGTCCTGCAAACGCTCTGTGTGCTCAGGCTCTGGACACTTTCAACAATgtaagcttct ... atcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTAC
tgctagcgaagctaagtacctgcaaatacacggcctgacgccttgatcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTACGCGTCTCCTGCGCCAAACGTTCTCAGCAGACCGGTGGACGGTGGTAGAA
aaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttctccggcctcccaaatatgtatgctagcgaagctaagtacctgcaaatacacggcctgacgccttgatcgatgcagCTCATCAACGAAGTCCAGAACGCCCAGATCTTACTGGACACGTGCGTCTACGCGTCTCCTGCGCCAAACGTTCTCAGCAGACCGGTGGACGGTGGTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA