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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTCCTCGCCTTCGCCTGCAGCTCCAGCTCCGGACGGGTGGTGGTCACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgcccgcgtggcgtgtctactagtagtatcctccttcttcttcttcattcattcatcctggtggtgtactactagactactactagtagctcacgcgcgcggcacatgtagatgtagcctctaaccaccgttgctgccctgaaactcaaaacgaag

Basic information

species Zea mays
transcript GRMZM2G471269_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211339195|gb|FL410612.1|FL410612
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211317844|gb|FL424598.1|FL424598
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTAC
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTAC
EST: gi|211361158|gb|FL409334.1|FL409334
EST:     ACTAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211319633|gb|FL415404.1|FL415404
EST:     ACCAGCTTGCCTG-CTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211219464|gb|FL394121.1|FL394121
EST:     ACCAGCTTGCCTG-CTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211284434|gb|FL407065.1|FL407065
EST:     ACTAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|71437541|gb|DR818591.1|DR818591
EST:     ACCTGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCTAAACAGG                         GTAAGTGAAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTAC
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTAC
EST: gi|211458639|gb|FL385383.1|FL385383
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211348131|gb|FL378229.1|FL378229
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211073389|gb|FL369067.1|FL369067
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211343693|gb|FL394263.1|FL394263
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211214594|gb|FL385235.1|FL385235
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211357904|gb|FL385739.1|FL385739
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
EST: gi|211425791|gb|FL370217.1|FL370217
EST:     ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGG                         GTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT
genomic: ACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgc ... caaaacgaagGTACGTGGAGGTGGAGGAGGACGCCGGCGTGGAGCTCTTCTACTACTTCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGCTCCTCGCCTTCGCCTGCAGCTCCAGCTCCGGACGGGTGGTGGTCACCAGCTTGCCTGGCTTCGACGGCGACCTCCCCTTCCACCTCGAAACAGGgtgcgcgtgcccgcgtggcgtgtctactagtagtatcctccttcttcttcttcattcattcatcctggtggtgtactactagactactactagtagctcacgcgcgcggcacatgtagatgtagcctctaaccaccgttgctgccctgaaactcaaaacgaag

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