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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccaagtatttggatgatgcatggagttggagtgagcgattttgatttgccttgtgtgaaaaataagatgctggatgctctctctcgcctcgcagGTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCCTGCGATACAACCACAACTCGTGGTCAAAG

Basic information

species Zea mays
transcript GRMZM2G471269_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211361158|gb|FL409334.1|FL409334
EST:     CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCG                         GTCCCATCAGATTCGTCCTGGAAC
genomic: CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCGgtacgccaag ... cgcctcgcagGTCCCATCAGATTCGTCCTGGAAC
EST: gi|211348131|gb|FL378229.1|FL378229
EST:     CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCG                         GTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCCTGC
genomic: CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCGgtacgccaag ... cgcctcgcagGTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCCTGC
EST: gi|211073389|gb|FL369067.1|FL369067
EST:     CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCG                         GTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGC
genomic: CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCGgtacgccaag ... cgcctcgcagGTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGC
EST: gi|211214594|gb|FL385235.1|FL385235
EST:     ACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTTACGAGATCG                         GTTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCT
genomic: ACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCT-ACGAGATCGgtacgccaag ... cgcctcgcagGT-CCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCT
EST: gi|211425791|gb|FL370217.1|FL370217
EST:     CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCG                         GTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCTTGC
genomic: CACCGGCGGCGACCGCTGCTCCGTCTTCAGCGGCCTCGCCTACGAGATCGgtacgccaag ... cgcctcgcagGTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatttgccttgtgtgaaaaataagatgctggatgctctctctcgcctcgcagGTCCCATCAGATTCGTCCTGGAACCCTACAACGGCACCCTGCCGCGCCTGCGATACAACCACAACTCGTGGTCAAAG
 ttttgat  putative branch site (score: 4)
                                   tgctctctctcgcctc  putative PPT
                  aaaaataagat  TA-rich tract