Sequence
atgc intronic sequence ATGC exonic sequenceCTCAGGTGCTTGTAGAAAAACTGCAAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgcttgttcttaatatattagctccgctattacctttactgtagttacctggtagtatattgtatttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 13
CTCAGGTGCTTGTAGAAAAACTGCAAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgct-----tgttcttaatatattagctccgctattacctttactgtag-ttacctggtagtatattg-tatttgcag
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TTCAAGTTCGAGCAAAATAATGGCAAGGCTTAACCATTGGGATGTTGAAACTCTGTTTCATGAGTTTGGCCATGCCCTTCATTCTCTACTCTCAAGAACGgtattttgctgtccttttttataatatttaggtctctccaatgactccaggattgcttatctgccagcataatgatatttgcag
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G06470.1 (Glycine max), 5'ss of exon 10
CTCAGGTGCTTGTAGAAAAACTGC---AAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgcttg-ttcttaatatattagctccgctattacctttactgtagttacctggtagtatattgtatttgcag----------------------
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---GGGTGCATGGAATTCGTCTGCTGTAAGTCTCAGTCATTGGGAAGTAGAAACTCTATTTCATGAGTTTGGACATGCTCTTCAGTCACTGCTTTCAAGAACGgtattctcttgaacttttacgaggaaagtgttgctttacaaaatgaggtcataaatctatatgacgtggtagaatcaaagataaacatttgtgaaatttg
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G13080.1 (Glycine max), 5'ss of exon 10
CTCAGGTGCTTGTAG---AAAAACTGCAAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgcttgttctt-------aatatattagctc-cgctattacctttactgta-gttacctggtagtatattgtatttgcag--------------
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---GGGTTCTCGGAATCCATCAGCTGTAAGGCTCAATCATTGGGAAGTAGAAACTCTATTTCATGAGTTTGGACATGCTCTTCATTCACTGCTTTCAAGAACGgtattctcttgatctttcgtgaggaaagtgttgctttacaaaatgaggataaatctatatgacgtggcagaatcaaagataaacatttgtgaaatttggg
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv16s0022g01280.t01 (Vitis vinifera), 5'ss of exon 2
CTCAGGTGCTTGTAGAAAAACT---GCAAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgcttgttcttaatatatta-gctccgcta--ttacctttactgtagttacctggta-gtatattgtatttgcag
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---CGGTTCACGCAGTTCATCTTCTGCAAAGCTGAACCATTGGGAAGTAGAAACTCTTTTTCATGAGTTTGGACATGCTCTTCATTCTTTGCTTTCAAGAACGgtattctattaatgctct-tgtactaagcaaaactaagttactgtttctttctcctcttagtttatattttgttgttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31354813|gb|CD439170.1|CD439170EST: CCTTCACTCTCTGTTGTCAAGAACG GAATATCAGCCTTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC
genomic: CCTTCACTCTCTGTTGTCAAGAACGgtattttgct ... gtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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CTCAGGTGCTTGTAGAAAAACTGCAAGGCTTAACCATGGGGATGTTGAAACTCTTTTTCATGAGTTTGGGCATGCCCTTCACTCTCTGTTGTCAAGAACGgtattttgcttgttcttaatatattagctccgctattacctttactgtagttacctggtagtatattgtatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC