Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGAACATGTAATGAAAAGAGTGCCGATCTAGAACCCTGGGATGAGGATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCAgtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccccctctgtttggcatctatcag

Basic information

species Zea mays
transcript GRMZM2G450659_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G450659_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 10
GAGAAGAACATGTAATGAAAAGAGTGCCGATCTAGAACCCTGGGATGAGGATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCAgtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccccctctgtttggcatctatcag
|||||    ||| ||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |  ||||||||||||||       | |  |||  ||      || || | ||  |   ||  || |    | | |  ||||   ||||      | ||||  ||| ||   | | || |||                                                   
GAGAAATGTATGCAATGAAAAGAGTGCTAAACTTGAACCCTGGGATGAGGATTACTTCATTGGAATGATGAAATCAGCTGTACATAACCTGGATGTCTCAgtatgtgctaa-------tttttgtgggga------tgcacttcaaaatatagtagaactactttataaattata--acatgt---tatttagatcacaatctagatctttatgtaaa------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557906|gb|CA830141.1|CA830141
EST:     ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCA                         GTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTT
genomic: ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCAgtatgtgcta ... catctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTT
EST: gi|21891714|gb|BQ744927.1|BQ744927
EST:     ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCA                         GTTATTGCAAAATACTTTCCCTTGTCGCAGCGCCTAAAAGGGTTAAATGTT
genomic: ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCAgtatgtgcta ... catctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTT