Sequence
atgc intronic sequence ATGC exonic sequencegtattttgcttgttcttaatatattagctccgctattacctttactgtagttacctggtagtatattgtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450659_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 3'ss of exon 13
gtattttgc-----ttgttcttaatatattagctccgctattacctttactgtag-ttacctggtagtatattg-tatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA
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gtattttgctgtccttttttataatatttaggtctctccaatgactccaggattgcttatctgccagcataatgatatttgcagGAGTATCAACATTTCTCTGGTACTAGAGTTGCTCTTGATGTGGCTGAAATGCCATCAAACCTCTTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31354813|gb|CD439170.1|CD439170EST: CCTTCACTCTCTGTTGTCAAGAACG GAATATCAGCCTTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC
genomic: CCTTCACTCTCTGTTGTCAAGAACGgtattttgct ... gtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attagctccgctattacctttactgtagttacctggtagtatattgtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA
tagtatattgtattt TA-rich tract