1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagaaattccagtactagtgacagatgaccttatcattttgttgaagcaatatgtcaacattactttgtaactttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGCCAATTGAAGGCCAGCAAAGGCCAAGAACGACAATCCTGATAAAGTTTG
species | Zea mays |
transcript | GRMZM2G439457_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGAGC-TTTGTTGCGGGCATTGTAAAG GGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGEST: gi|12971087|gb|BG267308.1|BG267308
genomic: CTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattc ... ctttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
EST: ATGGGAGCATTCAGCTGTGGAGCTTTTGTTGCGGGCATTGTAAAG GGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGEST: gi|23357590|gb|BU645239.1|BU645239
genomic: ATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattc ... ctttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
EST: CTGTGGAGCTTTTGTTGCGGGCATTGTAAAG GGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGEST: gi|60339805|gb|DN206778.1|DN206778
genomic: CTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattc ... ctttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
EST: AAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG GGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGEST: gi|22520635|gb|BU079446.1|BU079446
genomic: AAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattc ... ctttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
EST: AAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG GGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
genomic: AAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAGgtagaaattc ... ctttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTG
gaccttatcattttgttgaagcaatatgtcaacattactttgtaactttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGCCAATTGAAGGCCAGCAAAGGCCAAGAACGACAATCCTGATAAAGTTTG
ttgtaac putative branch site (score: 146)
ctttttgt CT-rich tract
tatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaattccagtactagtgacagatgaccttatcattttgttgaagcaatatgtcaacattactttgtaactttttgtagGGTGTATTAGATAATGCCGGCTTTCCTGCCGTAGTTACTGCACATTTTGTGCCAATTGAAGGCCAGCAAAGGCCAAGAACGACAATCCTGATAAAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC