Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgataccagtttgtttgtttggttatacaatggtttttgtaaaatactggaacaatttttatgctccatttttgcaaataatattttgtagtcatat...

Basic information

species Zea mays
transcript GRMZM2G439457_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439457_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g51220.1 (Oryza sativa), 5'ss of exon 3
GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgataccagtttgtttgt-----ttggttatacaatggtttttgt--aaaatac---------tggaaca-atttttatg--ctccatttttgcaaataatattttgtagtcatat
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |  | || ||| |      |  || || ||| |   | ||   ||||||         || |  | ||   |||   |||    |||  | | || || ||  | |||   
GCTGGAAGATGCTGGTTATGCTGTTGGTGCAAGAGTTCTTGAACTACTCTGTCACAGAGAGAAGgtttgatgcatgattctttttaccttctttttgtataattgacatggtctgaaatacagtgcattgtgaagtatatccgtataacctcttgctttatataaaaaatatttaattcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211015960|gb|FL234136.1|FL234136
EST:     TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGCAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAG
genomic: TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGG-AGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAG
EST: gi|211167225|gb|FL234175.1|FL234175
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211015955|gb|FL234131.1|FL234131
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211015954|gb|FL234130.1|FL234130
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTT
EST: gi|211015961|gb|FL234137.1|FL234137
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACA
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACA
EST: gi|211015950|gb|FL234126.1|FL234126
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165560|gb|FL234156.1|FL234156
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018735|gb|FL234139.1|FL234139
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165559|gb|FL234155.1|FL234155
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165566|gb|FL234162.1|FL234162
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|26558784|gb|CA831019.1|CA831019
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165562|gb|FL234158.1|FL234158
EST:     TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGNAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCAATTCATCCACA
genomic: TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGG-AGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCA-TTCATCCACA
EST: gi|9952789|gb|BE639372.1|BE639372
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211013170|gb|FL234112.1|FL234112
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018736|gb|FL234140.1|FL234140
EST:     GTTATGCTGTTGGTGCAAGGGTGCTYNAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTTCATCCACAG
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATT-CATCCACAG
EST: gi|211013167|gb|FL234109.1|FL234109
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTTCATCCACAG
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATT-CATCCACAG
EST: gi|211013180|gb|FL234122.1|FL234122
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTAATCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211167219|gb|FL234169.1|FL234169
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|32837786|gb|CD977464.1|CD977464
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010399|gb|FL234105.1|FL234105
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211013174|gb|FL234116.1|FL234116
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGAC
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGAC
EST: gi|211015957|gb|FL234133.1|FL234133
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAA-TAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|60339805|gb|DN206778.1|DN206778
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165568|gb|FL234164.1|FL234164
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018739|gb|FL234143.1|FL234143
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATT
EST: gi|211167220|gb|FL234170.1|FL234170
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGNAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211015959|gb|FL234135.1|FL234135
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010396|gb|FL234102.1|FL234102
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165569|gb|FL234165.1|FL234165
EST:     TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGCAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAG
genomic: TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAG-AAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAG
EST: gi|211165558|gb|FL234154.1|FL234154
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018743|gb|FL234147.1|FL234147
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165561|gb|FL234157.1|FL234157
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|71424453|gb|DR806315.1|DR806315
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|22472973|gb|BU037453.1|BU037453
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211013172|gb|FL234114.1|FL234114
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018745|gb|FL234149.1|FL234149
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211167221|gb|FL234171.1|FL234171
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010393|gb|FL234099.1|FL234099
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165571|gb|FL234167.1|FL234167
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010395|gb|FL234101.1|FL234101
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGATAAN                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|32847348|gb|CD987029.1|CD987029
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211013168|gb|FL234110.1|FL234110
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGKAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCACTCCACAG
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCA-TCCACAG
EST: gi|211167218|gb|FL234168.1|FL234168
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCA
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCA
EST: gi|211010392|gb|FL234098.1|FL234098
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGAC
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGAC
EST: gi|211015949|gb|FL234125.1|FL234125
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGGAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211165564|gb|FL234160.1|FL234160
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|21432154|gb|BQ547644.1|BQ547644
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211167222|gb|FL234172.1|FL234172
EST:     TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGGAGAAG                         GGAAATWGACGWGAGACACGACTTCTGGGCATTTTATCATTCATCCA
genomic: TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGG-AGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCA
EST: gi|211165563|gb|FL234159.1|FL234159
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010394|gb|FL234100.1|FL234100
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211010401|gb|FL234107.1|FL234107
EST:     TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGGAGAAG                         GGAAATAGACGAGAGACACGACTTC
genomic: TTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGG-AGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTC
EST: gi|211015947|gb|FL234123.1|FL234123
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211015958|gb|FL234134.1|FL234134
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211015956|gb|FL234132.1|FL234132
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGYCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211013176|gb|FL234118.1|FL234118
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
EST: gi|211018734|gb|FL234138.1|FL234138
EST:     GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAG                         GGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT
genomic: GTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 229

GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 262

GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 205

GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgatacc ... gttacttcagGGAAATAGACGAGAGACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGAGGATGCTGGTTATGCTGTTGGTGCAAGGGTGCTTGAACTACTCTGTCACAGGGAGAAGgtttgataccagtttgtttgtttggttatacaatggtttttgtaaaatactggaacaatttttatgctccatttttgcaaataatattttgtagtcatat

- - - - - - - -  ATGCTG
- - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaataa