1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGGTTTGTGAACTTGTGTACTTCAT
species | Zea mays |
transcript | GRMZM2G439457_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211165560|gb|FL234156.1|FL234156
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: CATTTTATCATTCATCCACAGTACTGTTTGGNAAAGTGTTGTTTGGAAAG GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCEST: gi|26558784|gb|CA831019.1|CA831019
genomic: CATTTTATCATTCATCCACAGTACTGTTTGG-AAAGTGTTGTTTGGAAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATC
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|9952789|gb|BE639372.1|BE639372
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211013170|gb|FL234112.1|FL234112
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTCTGGAAAGEST: gi|211167219|gb|FL234169.1|FL234169
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTYGTTTGGAAAGEST: gi|211015957|gb|FL234133.1|FL234133
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGGTTGGAAAGTGTTGTTTGGAAAGEST: gi|60339805|gb|DN206778.1|DN206778
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211165568|gb|FL234164.1|FL234164
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTYGTTTGGAAAGEST: gi|211167220|gb|FL234170.1|FL234170
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: CATTTTATCATTCATCCACAGTACTGTTTTGGAAAGTGTTGTTTGGAAAG GTGGCTGACTCACTTGAAAAGGEST: gi|211165558|gb|FL234154.1|FL234154
genomic: CATTTTATCATTCATCCACAGTACTGTTT-GGAAAGTGTTGTTTGGAAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGG
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|22472973|gb|BU037453.1|BU037453
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211013172|gb|FL234114.1|FL234114
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211010393|gb|FL234099.1|FL234099
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211013168|gb|FL234110.1|FL234110
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: ACACGACTTCTGGGCATTTTATCATTCACTCCACAGTACTGTTTGGAAAGTGTCGTTTGGAAAGEST: gi|211015949|gb|FL234125.1|FL234125
genomic: ACACGACTTCTGGGCATTTTATCATTCA-TCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGGTTGGAAAGNTGT-GTTTGGAAAGEST: gi|21432154|gb|BQ547644.1|BQ547644
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAG-TGTTGTTTGGAAAGgtattatgtt
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211015947|gb|FL234123.1|FL234123
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGEST: gi|211015958|gb|FL234134.1|FL234134
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGGAAGTGTTGTTTGGAAAGEST: gi|211013176|gb|FL234118.1|FL234118
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: ATTTTATCATTCATCCACAGTACTGTTTTGGAAAGTGTTGTTTGGGAAAG GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGAT
genomic: ATTTTATCATTCATCCACAGTACTGTTT-GGAAAGTGTTGTTTGG-AAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGAT
aacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGGTTTGTGAACTTGTGTACTTCAT
tcttaat putative branch site (score: 192)
ctttatt putative PPT
attgtttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGGTTTGTGAACTTGTGTACTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
atggttg
- - - - - - - - - -aacctgc
- - - - - - - - - - - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgct