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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatcagcacccttcggaaaagccagctgatggcttgtttttcagactgacgatatttgagggacatgttttctgaaataaactgagttcagaggaaagttgggatcagtttctaaaaatgctatgaattcacttctccttaaataacgtgcatcttttcatgctcttgtagGTCGCTGGAGATCTCCTTAAGCAATACCAGGAGAATTTTAAGGGAGGGACACTTTCAGTCACCTGGAATTACTTACGGGACTCCATGAGTACCTACCTGT

Basic information

species Zea mays
transcript GRMZM2G419782_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820287_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g39220.2 (Oryza sativa), 3'ss of exon 2
gtacttatcagcacccttcggaaaagccagctgatggcttgtttttcagactgacgatatttgagggacatgttttctgaaataaactgagttca-gaggaaagttgggatcagtttctaaaaatgctatgaattcacttctccttaaataacgtgcatcttttcatgctcttgtagGTCGCTGGAGATCTCCTTAAGCAATACCAGGAGAATTTTAAGGGAGGGACACTTTCAGTCACCTGGAATTACTTACGGGACTCCATGAGTACCTACCTGT
                                                            || | | |||  |      | |||   ||  ||   | ||   |  ||| |  |||     ||| ||||   || |        | |||||| |||| || | ||| ||| ||| |||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||||||||| |||||  ||||||||||| | ||||||||||
-----------------------------------------------------------attcaagcacacat------acatattttgttttggtggggggggggggggttggtt-----aaaggctacttatcc-------ttcaaataatgtgcctcatatcacgctgttgcagGTTGCTGGAGATCTCCTGAAGCAATACCAGGAAAAATTTAAGGGAGGGACACTCTCAGCCACCTGGAACTACTTGAGGGACTCCATGGGCACCTACCTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctatgaattcacttctccttaaataacgtgcatcttttcatgctcttgtagGTCGCTGGAGATCTCCTTAAGCAATACCAGGAGAATTTTAAGGGAGGGACACTTTCAGTCACCTGGAATTACTTACGGGACTCCATGAGTACCTACCTGT
                        aaataac  putative branch site (score: 2)
                                    tcttttcatgctctt  putative PPT
                      ttaaataa  TA-rich tract