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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGAAAACCAACGATGAGGACCTTATTGCTGACGTGCATGTTCTTTCGTCTGGGTTGAAAGCCTACATAACTTCATATACAGCCAAGTCTATAAGCgtatgcagagaagcctgtggtggccatggctatgctgctgtaaatcgttttggacatattccaaacatttgagggggacaacactgttcttctgcag

Basic information

species Zea mays
transcript GRMZM2G419782_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G445791_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 2
-AATGAAGAAAACCAACGATGAGGACCTTATTGCTGACGTGCATGTTCTTTCGTCTGGGTTGAAAGCCTACATAACTTCATATACAGCCAAGTCTATAAGCgtatgcagagaagcctgtggtggccatggctatgctgctgtaaatcgtt--ttggacatattcca-aacatttgagggggacaacactgttcttctgcag---
     | |   |     | ||   | | | ||| ||   |||    |  |     |   ||  |  | |    |       ||||||     |   | |||   | |  |  |||||    ||   |   ||| | ||   ||||   |      ||| |||   | || |||| |   | |  |   |   || | | ||   
TGGCCATGGGTAT-GCTGCTGTAAATCGTTTTGGTGCTTTGCGCAATGATCATGATATATTTCAGACATTTGAAGGAGATAATACAGTTC--TTCTTCAGCAGgtaccaatcagcctcctttgttaacaactaagttgacttaaacactcagcctgacctatgtaataatattttacttgcaggattttaa-ctgcagtagtaa

upper sequence: GRMZM2G445791_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT5G65110.2 (Arabidopsis thaliana), 5'ss of exon 3
AATGAAGAAAACCAACGATGAGGACCTTATTGCTGACGTGCATGTTCTTTCGTCTGGGTTGAAAGCCTACATAACTTCATATACAGCCAAGTCTATAAGCgtatgcagagaagcctgtggtggccatggctatgctgctgtaaatcgttttggacatattccaaacatttgagggggacaacactgttcttctgcag
        |   ||  | |  | | ||  |  | ||  || | | |             ||| |   | || ||| |   |   || |||  || ||  | | ||||      |||    |  |      || |   || | | |  | |||   ||| ||   |   |  | |         || ||  | | |||
--------AGGTCATGGTTACGCAGCTGTTAACCGATTTGGAAGCTTGAGAAATGATCATGACATTTTCCA-AACATTTGAAGGAGACAACACTGTA--CTTCTGCAACAGgtcctcctttcact-cctttaagaaactttcacttctcttgagaataatc---atgctcaaag----tttttcttttgcttt-cag