Sequence
atgc intronic sequence ATGC exonic sequence...tgtccttctggattaaattttgtagccagctatgtactctctatctgatagaagtcttagtctctcatatagtattaactttacctccttgctaatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G445791_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g39220.1 (Oryza sativa), 3'ss of exon 1
tgtccttctggattaaattttgtagccagctatgtactctctatctgatagaagtctt-------agtctctcatatagtattaact---ttacctccttgctaatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG--------------
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----------gctccaaaaatgcagatgatcttttaccctttttttaacaaagttattttttaggagctttgcattggaaattcactacatgacctgcttgttaatgcagCCTTTGGGGAGGTTCTATAATAAATCTGGGAACCAAAAAGCACAGAGATAGGTTCTTTGACGGAATCGACAATTTGGATTATCCTGGCTGTTTTGCTATG
upper sequence: GRMZM2G445791_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G31390.1 (Glycine max), 3'ss of exon 1
---------------------tgtccttctggattaaattttgtagcc-agctatgtactctctatctgatagaagtcttagtctctcatatagtattaactttacctccttgc---taatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG--------------
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gtacgcaacttaatttaccagttttcttaatgtttaatttgtctattttaattccatgttaattag-tgtaaaaagttttttgctaactaatactaataactctttttttttttgtgttgtgcagTCTTTGGGGTGGTTCTGTTCTCAATTTGGGGACCAAGAAGCATAAGGATAAGTACTTTGATGGGATTGATAACTTGGACTACCCTGGTTGTTTTGCTATG
upper sequence: GRMZM2G445791_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G65110.2 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------------tgtccttctggattaaattttgtagccagctatgt-actctctatct---gatagaagtcttagtctctcatatagtattaactttacctccttgctaatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG--------------
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gttagtagtagtctaaattgaaatatttttgttttgtggttgttcttgatggaaaaggtttg-atcttgttttgttagtattgatgttaggattcatactctagtctctggatttgatttgttgatacgtatatatt--tgcagTCTCTGGGGAGGCTCTGTGATCAATTTAGGGACTAAGAAGCATAGAGACAAGTATTTTGATGGCATTGACAATCTTGATTACACCGGTTGCTTTGCCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatagaagtcttagtctctcatatagtattaactttacctccttgctaatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG
ctttacctccttgct CT-rich tract
atatagtattaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtccttctggattaaattttgtagccagctatgtactctctatctgatagaagtcttagtctctcatatagtattaactttacctccttgctaatgcagTCTCTGGGGTGGTTCTGTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA