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gtaatactctttcttttaaccattttctcatttcagttgcttaaacttaactggtgcactgtccatggattgttctctcattctacttcctgtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG
species | Zea mays |
transcript | GRMZM2G409430_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCEST: gi|71423081|gb|DR805945.1|DR805945
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCEST: gi|149010019|gb|EE041829.2|EE041829
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCEST: gi|71449560|gb|DR830610.1|DR830610
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTTCA-CGATGGCGAGCACGGTGTACTCTAAGCTEST: gi|149015081|gb|EE044836.2|EE044836
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGT-CAACGATGGCGAGCACGGTGTACTCTAAGCT
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCEST: gi|78113107|gb|DV531501.1|DV531501
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
EST: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCC GATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
genomic: ATAAACGTTTGCAAGGCTGGCTTCCTGAGCGTCTTGTTGATTGGTTAGCCgtaatactct ... gtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTC
ttaactggtgcactgtccatggattgttctctcattctacttcctgtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG
acttaac putative branch site (score: 27)
ttctctcattctactt putative PPT
tgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactctttcttttaaccattttctcatttcagttgcttaaacttaactggtgcactgtccatggattgttctctcattctacttcctgtgattttagGATTTTGACAGCCTGCTGTCAACGATGGCGAGCACGGTGTACTCTAAGCTCAGCAATTTCCAGAAAAAACTCGTTAACTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA